STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0971Conserved hypothetical protein. (381 aa)    
Predicted Functional Partners:
Nham_0972
TonB-dependent siderophore receptor.
 
    0.758
Nham_2198
Copper resistance D.
  
    0.670
Nham_3292
TonB-dependent siderophore receptor.
 
    0.630
Nham_3257
TonB-dependent receptor, plug.
 
   
 0.550
Nham_1981
Metallophosphoesterase.
  
     0.520
Nham_1025
TonB-dependent receptor.
 
   
 0.518
Nham_1513
TonB-dependent receptor.
 
    0.471
Nham_1359
Metallophosphoesterase.
  
     0.463
Nham_3779
Metallophosphoesterase.
  
     0.422
Nham_3638
TonB-dependent siderophore receptor.
 
    0.416
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.