STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_0972TonB-dependent siderophore receptor. (762 aa)    
Predicted Functional Partners:
Nham_0971
Conserved hypothetical protein.
 
    0.758
Nham_3721
PepSY-associated TM helix.
 
    0.691
Nham_2201
TonB-dependent receptor.
 
   
 0.623
Nham_1514
2OG-Fe(II) oxygenase.
 
    0.519
Nham_3637
2OG-Fe(II) oxygenase.
 
    0.505
Nham_0973
Hypothetical protein.
       0.461
Nham_3257
TonB-dependent receptor, plug.
  
  
 0.428
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.