STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_1024Glycosyl hydrolase, BNR repeat. (402 aa)    
Predicted Functional Partners:
Nham_1023
Putative signal peptide protein.
 
     0.955
Nham_1025
TonB-dependent receptor.
 
    0.819
Nham_3366
TonB-dependent receptor.
   
 
 0.772
Nham_0107
Protein of unknown function DUF255.
    
   0.724
Nham_2621
TonB-dependent receptor, plug.
  
 
   0.661
Nham_2657
Peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.654
Nham_0090
DNA translocase FtsK.
    
 
 0.647
Nham_3838
Cell division protein FtsK/SpoIIIE.
    
 
 0.647
Nham_2708
Conserved hypothetical protein.
  
     0.646
Nham_0525
C-terminal processing peptidase-3, Serine peptidase, MEROPS family S41A; Belongs to the peptidase S41A family.
  
   0.607
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.