STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_1181Twin-arginine translocation pathway signal. (746 aa)    
Predicted Functional Partners:
Nham_1182
(2Fe-2S)-binding protein.
 0.998
Nham_1183
Cytochrome c, class I.
  
 0.987
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP; Belongs to the NAPRTase family.
     
  0.900
Nham_1039
(2Fe-2S)-binding protein.
 
 0.896
Nham_1453
(2Fe-2S)-binding protein.
 
 0.861
Nham_2607
(2Fe-2S)-binding protein.
 
 0.860
Nham_2602
Predicted sulfurylase large subunit, molybdopterin cytosine dinucleotide biosynthesis.
 
  
 0.730
Nham_1040
Molybdopterin dehydrogenase, FAD-binding protein.
 
 
 0.686
Nham_2603
Predicted sulfurylase small subunit, molybdopterin cytosine dinucleotide biosynthesis.
 
  
 0.666
Nham_1455
Carbon-monoxide dehydrogenase.
  
 
 0.643
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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