STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_1237Diguanylate cyclase. (227 aa)    
Predicted Functional Partners:
Nham_2933
Response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain).
  
 0.845
Nham_3660
Response regulator receiver modulated diguanylate phosphodiesterase.
  
 0.845
Nham_4035
Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.
 
 
 0.772
Nham_3158
Diguanylate phosphodiesterase (EAL domain).
 
  
 0.596
Nham_1241
Diguanylate cyclase/phosphodiesterase.
 
 
0.595
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.592
Nham_3549
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.579
purK
5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.569
Nham_0235
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.557
Nham_3488
PAS/PAC sensor hybrid histidine kinase.
 
 
 0.553
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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