Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nham_1237Diguanylate cyclase. (227 aa)    
Predicted Functional Partners:
Nham_2933
Response regulator receiver (CheY-like) modulated diguanylate phosphodiesterase (EAL domain).
 
  
 0.853
Nham_3660
Response regulator receiver modulated diguanylate phosphodiesterase.
 
  
 0.853
Nham_4035
Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase.
 
 
 0.757
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.686
purK
5-(carboxyamino)imidazole ribonucleotide synthase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).
       0.680
Nham_3158
Diguanylate phosphodiesterase (EAL domain).
 
  
 0.619
Nham_1241
Diguanylate cyclase/phosphodiesterase.
 
 
0.551
Nham_0628
Diguanylate cyclase/phosphodiesterase.
 
 
0.546
Nham_1384
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.536
Nham_3549
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
0.534
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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