Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Nham_0239 | Nham_0652 | Putative outer membrane protein. | Cyclic nucleotide-binding protein. | 0.537 |
Nham_0239 | Nham_0653 | Putative outer membrane protein. | Conserved hypothetical protein. | 0.623 |
Nham_0239 | Nham_1810 | Putative outer membrane protein. | Conserved hypothetical protein. | 0.707 |
Nham_0239 | Nham_2170 | Putative outer membrane protein. | Tetratricopeptide TPR_2. | 0.742 |
Nham_0652 | Nham_0239 | Cyclic nucleotide-binding protein. | Putative outer membrane protein. | 0.537 |
Nham_0652 | Nham_0653 | Cyclic nucleotide-binding protein. | Conserved hypothetical protein. | 0.935 |
Nham_0652 | Nham_1613 | Cyclic nucleotide-binding protein. | Hypothetical protein. | 0.467 |
Nham_0652 | Nham_1810 | Cyclic nucleotide-binding protein. | Conserved hypothetical protein. | 0.632 |
Nham_0652 | Nham_2169 | Cyclic nucleotide-binding protein. | Adenylate/guanylate cyclase. | 0.622 |
Nham_0652 | Nham_2170 | Cyclic nucleotide-binding protein. | Tetratricopeptide TPR_2. | 0.691 |
Nham_0653 | Nham_0239 | Conserved hypothetical protein. | Putative outer membrane protein. | 0.623 |
Nham_0653 | Nham_0652 | Conserved hypothetical protein. | Cyclic nucleotide-binding protein. | 0.935 |
Nham_0653 | Nham_1810 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.670 |
Nham_0653 | Nham_2170 | Conserved hypothetical protein. | Tetratricopeptide TPR_2. | 0.721 |
Nham_1429 | Nham_1613 | Putative glycohydrolase. | Hypothetical protein. | 0.535 |
Nham_1429 | Nham_1810 | Putative glycohydrolase. | Conserved hypothetical protein. | 0.520 |
Nham_1429 | Nham_2170 | Putative glycohydrolase. | Tetratricopeptide TPR_2. | 0.440 |
Nham_1533 | Nham_1613 | Amine oxidase. | Hypothetical protein. | 0.459 |
Nham_1533 | Nham_1810 | Amine oxidase. | Conserved hypothetical protein. | 0.525 |
Nham_1533 | Nham_2170 | Amine oxidase. | Tetratricopeptide TPR_2. | 0.420 |
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