Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Nham_2020Phage Terminase. (542 aa)    
Predicted Functional Partners:
Nham_2021
Phage terminase, small subunit, putative, P27.
 
    0.953
Nham_2027
Phage portal protein.
 
     0.818
Nham_2025
Phage major capsid protein, HK97.
 
     0.816
Nham_0334
Phage terminase, small subunit, putative, P27.
 
    0.805
Nham_1724
Phage terminase, small subunit, putative, P27.
 
    0.805
Nham_2481
Phage terminase, small subunit, putative, P27.
 
    0.805
Nham_2024
Conserved hypothetical protein.
 
     0.793
Nham_0337
Phage major capsid protein, HK97.
 
     0.786
Nham_0339
Phage portal protein, HK97.
 
     0.777
Nham_1717
Phage portal protein, HK97.
 
     0.777
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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