STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_2170Tetratricopeptide TPR_2. (446 aa)    
Predicted Functional Partners:
Nham_1810
Conserved hypothetical protein.
 
     0.799
Nham_0239
Putative outer membrane protein.
  
     0.742
Nham_0653
Conserved hypothetical protein.
  
 
   0.721
Nham_0652
Cyclic nucleotide-binding protein.
  
     0.691
Nham_2169
Adenylate/guanylate cyclase.
 
     0.687
Nham_1945
Hypothetical protein.
  
     0.627
Nham_1924
Conserved hypothetical protein.
  
     0.614
Nham_1613
Hypothetical protein.
  
     0.555
Nham_3285
Cytochrome c biogenesis factor.
 
 
   0.514
Nham_0005
Conserved hypothetical protein.
  
     0.500
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.