STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_2425Uncharacterized conserved protein UCP032025. (151 aa)    
Predicted Functional Partners:
Nham_2426
Conserved hypothetical protein.
       0.846
Nham_2427
Conserved hypothetical protein.
       0.592
Nham_0500
Conserved hypothetical protein.
  
     0.564
Nham_2440
NUDIX hydrolase.
  
     0.538
Nham_3706
Histidine kinase.
  
     0.534
Nham_3253
Double-transmembrane region-like protein.
  
     0.448
Nham_0287
Uncharacterized conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.442
Nham_0241
Metallophosphoesterase.
  
     0.433
Nham_2439
Protein of unknown function DUF983.
  
     0.431
Nham_0015
UspA.
  
     0.428
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.