Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nham_0496 | Nham_2561 | Nham_0496 | Nham_2561 | Heat shock protein DnaJ-like protein. | Nuclear protein SET. | 0.653 |
Nham_0592 | Nham_2561 | Nham_0592 | Nham_2561 | Hypothetical protein. | Nuclear protein SET. | 0.653 |
Nham_0594 | Nham_0780 | Nham_0594 | Nham_0780 | Hypothetical protein. | Histone deacetylase superfamily. | 0.680 |
Nham_0594 | Nham_2561 | Nham_0594 | Nham_2561 | Hypothetical protein. | Nuclear protein SET. | 0.895 |
Nham_0594 | Nham_2639 | Nham_0594 | Nham_2639 | Hypothetical protein. | Conserved hypothetical protein. | 0.735 |
Nham_0767 | Nham_2561 | Nham_0767 | Nham_2561 | Chaperone DnaJ-like protein. | Nuclear protein SET. | 0.653 |
Nham_0780 | Nham_0594 | Nham_0780 | Nham_0594 | Histone deacetylase superfamily. | Hypothetical protein. | 0.680 |
Nham_0780 | Nham_2561 | Nham_0780 | Nham_2561 | Histone deacetylase superfamily. | Nuclear protein SET. | 0.887 |
Nham_0780 | Nham_2639 | Nham_0780 | Nham_2639 | Histone deacetylase superfamily. | Conserved hypothetical protein. | 0.687 |
Nham_0780 | atpD | Nham_0780 | Nham_0529 | Histone deacetylase superfamily. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.488 |
Nham_2078 | Nham_2561 | Nham_2078 | Nham_2561 | Alpha-2-macroglobulin-like protein. | Nuclear protein SET. | 0.823 |
Nham_2561 | Nham_0496 | Nham_2561 | Nham_0496 | Nuclear protein SET. | Heat shock protein DnaJ-like protein. | 0.653 |
Nham_2561 | Nham_0592 | Nham_2561 | Nham_0592 | Nuclear protein SET. | Hypothetical protein. | 0.653 |
Nham_2561 | Nham_0594 | Nham_2561 | Nham_0594 | Nuclear protein SET. | Hypothetical protein. | 0.895 |
Nham_2561 | Nham_0767 | Nham_2561 | Nham_0767 | Nuclear protein SET. | Chaperone DnaJ-like protein. | 0.653 |
Nham_2561 | Nham_0780 | Nham_2561 | Nham_0780 | Nuclear protein SET. | Histone deacetylase superfamily. | 0.887 |
Nham_2561 | Nham_2078 | Nham_2561 | Nham_2078 | Nuclear protein SET. | Alpha-2-macroglobulin-like protein. | 0.823 |
Nham_2561 | Nham_2639 | Nham_2561 | Nham_2639 | Nuclear protein SET. | Conserved hypothetical protein. | 0.718 |
Nham_2561 | atpD | Nham_2561 | Nham_0529 | Nuclear protein SET. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.924 |
Nham_2561 | dnaJ | Nham_2561 | Nham_0156 | Nuclear protein SET. | Chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and [...] | 0.653 |
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