STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3000Two component transcriptional regulator, LuxR family. (263 aa)    
Predicted Functional Partners:
Nham_3989
Hypothetical protein.
  
 
 0.804
Nham_2177
Multi-sensor signal transduction histidine kinase.
 
 
 
 0.516
Nham_1881
Transcriptional regulator, LuxR family.
  
     0.477
Nham_1398
Multi-sensor hybrid histidine kinase.
   
 
 0.475
Nham_0274
Periplasmic sensor hybrid histidine kinase.
 
 
 
 0.436
Nham_0129
Multi-sensor hybrid histidine kinase.
  
 
 0.431
Nham_0235
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.421
Nham_3488
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.400
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.