STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3203FAD linked oxidase-like protein. (452 aa)    
Predicted Functional Partners:
Nham_3202
Protein of unknown function DUF224, cysteine-rich region.
 
 
 0.996
Nham_3204
FAD linked oxidase-like protein.
  
 
0.971
Nham_2804
Serine--glyoxylate transaminase.
 
 
 0.928
Nham_0045
Glycolate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.921
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.921
Nham_0804
Catalase; Belongs to the catalase family.
   
 0.913
Nham_0854
Catalase-like protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 0.913
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.908
Nham_1097
Isocitrate lyase.
     
 0.907
Nham_4010
4-phosphoerythronate dehydrogenase (FAD-dependent).
     0.714
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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