STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3206Transcriptional regulator, TetR family. (227 aa)    
Predicted Functional Partners:
Nham_1436
Conserved hypothetical protein.
  
     0.643
Nham_0251
Conserved hypothetical protein.
  
     0.605
Nham_2639
Conserved hypothetical protein.
  
     0.533
Nham_2886
Conserved hypothetical protein.
  
     0.517
Nham_2051
AMP-dependent synthetase and ligase.
  
     0.498
Nham_0909
Conserved hypothetical protein.
  
     0.482
Nham_0564
Conserved hypothetical protein.
  
     0.477
Nham_2580
Conserved hypothetical protein.
  
     0.474
Nham_3207
Hypothetical protein.
       0.469
Nham_0652
Cyclic nucleotide-binding protein.
  
     0.457
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.