STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3285Cytochrome c biogenesis factor. (216 aa)    
Predicted Functional Partners:
Nham_1439
Cytochrome c-type biogenesis protein CcmF.
  
 
 0.707
Nham_0413
Periplasmic protein thiol.
  
  
 0.657
Nham_1440
Cytochrome C biogenesis protein; Possible subunit of a heme lyase.
  
  
 0.549
Nham_2170
Tetratricopeptide TPR_2.
 
 
   0.514
Nham_1810
Conserved hypothetical protein.
  
     0.435
Nham_3284
Multicopper oxidase, type 3.
       0.414
Nham_3590
Protein of unknown function DUF1025.
  
     0.413
Nham_2184
Peptidase M48, Ste24p.
 
    0.402
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.