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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3333Phage-related baseplate assembly protein V. (175 aa)    
Predicted Functional Partners:
Nham_3332
GPW/gp25.
 
 
 0.977
Nham_3331
Baseplate J-like protein.
 
  
 0.973
Nham_3325
Phage major tail tube protein.
 
  
 0.950
Nham_2383
GPW/gp25.
 
 
 0.948
Nham_3326
Phage tail sheath protein.
 
 
 0.947
Nham_3320
Phage tail X.
 
  
 0.945
Nham_3321
Phage P2 GpU.
 
  
 0.941
Nham_2382
Baseplate J-like protein.
 
  
 0.940
Nham_2371
Phage late control D.
 
  
 0.938
Nham_3318
Phage late control D.
 
  
 0.938
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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