Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Nham_0254 | Nham_0265 | Invasion associated locus B. | Conserved hypothetical protein. | 0.635 |
Nham_0254 | Nham_0486 | Invasion associated locus B. | Protein of unknown function DUF949. | 0.703 |
Nham_0254 | Nham_1251 | Invasion associated locus B. | Phasin 2. | 0.448 |
Nham_0254 | Nham_2914 | Invasion associated locus B. | ErfK/YbiS/YcfS/YnhG. | 0.458 |
Nham_0254 | Nham_3389 | Invasion associated locus B. | Protein of unknown function DUF463, YcjX-like protein. | 0.450 |
Nham_0254 | Nham_3390 | Invasion associated locus B. | Conserved hypothetical protein 1620. | 0.627 |
Nham_0265 | Nham_0254 | Conserved hypothetical protein. | Invasion associated locus B. | 0.635 |
Nham_0265 | Nham_0486 | Conserved hypothetical protein. | Protein of unknown function DUF949. | 0.501 |
Nham_0265 | Nham_1251 | Conserved hypothetical protein. | Phasin 2. | 0.650 |
Nham_0265 | Nham_2914 | Conserved hypothetical protein. | ErfK/YbiS/YcfS/YnhG. | 0.430 |
Nham_0265 | Nham_3389 | Conserved hypothetical protein. | Protein of unknown function DUF463, YcjX-like protein. | 0.454 |
Nham_0265 | Nham_3390 | Conserved hypothetical protein. | Conserved hypothetical protein 1620. | 0.461 |
Nham_0265 | Nham_3516 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.504 |
Nham_0437 | Nham_3389 | Murein endopeptidase, Metallo peptidase, MEROPS family M74. | Protein of unknown function DUF463, YcjX-like protein. | 0.569 |
Nham_0437 | Nham_3390 | Murein endopeptidase, Metallo peptidase, MEROPS family M74. | Conserved hypothetical protein 1620. | 0.568 |
Nham_0486 | Nham_0254 | Protein of unknown function DUF949. | Invasion associated locus B. | 0.703 |
Nham_0486 | Nham_0265 | Protein of unknown function DUF949. | Conserved hypothetical protein. | 0.501 |
Nham_0486 | Nham_2914 | Protein of unknown function DUF949. | ErfK/YbiS/YcfS/YnhG. | 0.412 |
Nham_0486 | Nham_3389 | Protein of unknown function DUF949. | Protein of unknown function DUF463, YcjX-like protein. | 0.411 |
Nham_0486 | Nham_3390 | Protein of unknown function DUF949. | Conserved hypothetical protein 1620. | 0.503 |
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