STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Nham_3606Peptidase C14, caspase catalytic subunit p20. (292 aa)    
Predicted Functional Partners:
Nham_2217
Methyltransferase FkbM.
  
     0.538
Nham_3386
Conserved hypothetical protein.
  
     0.495
Nham_1783
Conserved hypothetical protein.
  
     0.448
Nham_3685
Histidine kinase.
  
     0.438
Nham_2985
Protein of unknown function DUF323.
     0.434
Nham_1533
Amine oxidase.
  
     0.423
Nham_2717
Conserved hypothetical protein.
  
     0.420
Nham_2177
Multi-sensor signal transduction histidine kinase.
  
     0.415
Nham_0468
Conserved hypothetical protein.
  
     0.413
Nham_0249
Transcriptional regulator, MarR family.
  
    0.405
Your Current Organism:
Nitrobacter hamburgensis
NCBI taxonomy Id: 323097
Other names: N. hamburgensis X14, Nitrobacter hamburgensis X14, Nitrobacter hamburgensis str. X14, Nitrobacter hamburgensis strain X14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.