Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Nwi_0010Conserved hypothetical protein. (400 aa)    
Predicted Functional Partners:
Nwi_3072
Protein of unknown function DUF423.
  
     0.754
Nwi_0623
Conserved hypothetical protein.
  
     0.728
Nwi_0051
Thioredoxin; Belongs to the thioredoxin family.
    
   0.679
Nwi_0073
Thioredoxin-related protein.
    
   0.679
Nwi_1226
Conserved hypothetical protein.
  
     0.610
Nwi_2530
Conserved hypothetical protein.
  
    0.604
Nwi_3012
Putative serinethreonine protein phosphatase.
  
     0.603
Nwi_2983
Conserved hypothetical protein.
  
     0.580
Nwi_1908
Conserved hypothetical protein.
  
     0.578
Nwi_0515
Conserved hypothetical protein.
 
 
 0.558
Your Current Organism:
Nitrobacter winogradskyi
NCBI taxonomy Id: 323098
Other names: N. winogradskyi Nb-255, Nitrobacter winogradskyi Nb-255, Nitrobacter winogradskyi str. Nb-255, Nitrobacter winogradskyi strain Nb-255
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