Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mhun_2000Radical SAM. (565 aa)    
Predicted Functional Partners:
Mhun_1996
Generic methyltransferase.
 
    0.887
Mhun_0253
Transcriptional regulator, MarR family.
  
    0.752
Mhun_1999
Periplasmic binding protein.
  
    0.752
Mhun_1122
AMMECR1.
 
     0.726
Mhun_2891
Protein of unknown function DUF52; Belongs to the MEMO1 family.
 
     0.700
Mhun_0171
Iron-containing alcohol dehydrogenase.
  
  
 0.674
Mhun_1737
Nitrite and sulphite reductase 4Fe-4S region.
  
  
 0.630
Mhun_1995
Periplasmic binding protein.
 
     0.530
Mhun_1998
Hypothetical protein.
       0.476
Mhun_1997
Radical SAM.
 
    
0.439
Your Current Organism:
Methanospirillum hungatei
NCBI taxonomy Id: 323259
Other names: M. hungatei JF-1, Methanospirillum hungatei DSM 864, Methanospirillum hungatei JF-1, Methanospirillum hungatei NBRC 100397, Methanospirillum hungatei str. JF-1, Methanospirillum hungatei strain JF-1
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