Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Mhun_2018ABC transporter related protein. (277 aa)    
Predicted Functional Partners:
Mhun_2017
Transport system permease protein.
 
 0.995
Mhun_1999
Periplasmic binding protein.
 
 
 0.924
Mhun_0259
Transport system permease protein.
 
 0.869
Mhun_0290
Transport system permease protein.
 
 0.864
Mhun_0286
Periplasmic binding protein.
 
 
 0.861
Mhun_1318
Transport system permease protein.
 
 0.856
Mhun_1995
Periplasmic binding protein.
 
     0.856
Mhun_0186
Transport system permease protein.
 
 0.850
Mhun_0260
Periplasmic binding protein.
 
 
 0.841
Mhun_0220
Transport system permease protein.
 
 0.812
Your Current Organism:
Methanospirillum hungatei
NCBI taxonomy Id: 323259
Other names: M. hungatei JF-1, Methanospirillum hungatei DSM 864, Methanospirillum hungatei JF-1, Methanospirillum hungatei NBRC 100397, Methanospirillum hungatei str. JF-1, Methanospirillum hungatei strain JF-1
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