STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBProtein of unknown function UPF0027; Belongs to the RtcB family. (477 aa)    
Predicted Functional Partners:
Mhun_3180
Archease family protein.
 
 0.994
Mhun_3179
Hypothetical protein.
       0.883
Mhun_3182
Hypothetical protein.
       0.877
prf1
Peptide chain release factor subunit 1 (aeRF-1); Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
  
    0.765
Mhun_3184
Biotin--acetyl-CoA-carboxylase ligase.
 
   
 0.755
Mhun_3188
Hypothetical protein.
       0.706
Mhun_3183
Conserved hypothetical protein.
       0.698
Mhun_3185
BioY protein.
       0.693
Mhun_3186
ABC transporter related protein.
       0.693
Mhun_3187
ABC transporter related protein.
       0.683
Your Current Organism:
Methanospirillum hungatei
NCBI taxonomy Id: 323259
Other names: M. hungatei JF-1, Methanospirillum hungatei DSM 864, Methanospirillum hungatei JF-1, Methanospirillum hungatei NBRC 100397, Methanospirillum hungatei str. JF-1, Methanospirillum hungatei strain JF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.