STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_0108MscS Mechanosensitive ion channel. (304 aa)    
Predicted Functional Partners:
Noc_1773
Conserved hypothetical protein.
   
    0.779
Noc_0468
Conserved hypothetical protein.
 
     0.567
Noc_0107
NAD-dependent epimerase/dehydratase.
       0.562
Noc_1444
Hypothetical protein.
  
     0.498
Noc_1030
MscS Mechanosensitive ion channel.
  
     0.489
Noc_1380
Endonuclease/exonuclease/phosphatase.
  
     0.465
Noc_1914
MscS Mechanosensitive ion channel.
  
     0.451
Noc_2886
Conserved hypothetical protein-transmembrane prediction.
  
     0.424
Noc_0521
Sodium/proton antiporter, CPA1 family; TC 2.A.36.
 
   
 0.420
Noc_1589
Conserved hypothetical protein.
  
    0.420
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.