STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_0218Alpha amylase, catalytic region. (650 aa)    
Predicted Functional Partners:
Noc_3063
Amino acid/polyamine/organocation transporter, APC superfamily; TC 2.A.3.
   
 0.938
Noc_3068
Sucrose synthase.
    
  0.906
Noc_0830
Trehalose synthase.
 
 
0.857
Noc_3069
HAD-superfamily hydrolase subfamily IIB.
 
 
 
 0.649
Noc_1740
Isoamylase; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.625
rlmB
23S rRNA Gm-2251 2'-O-methyltransferase; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.
 
    0.624
Noc_2718
HAD-superfamily hydrolase subfamily IIB; In the N-terminal section; belongs to the HAD-like hydrolase superfamily.
 
   
 0.606
Noc_1681
Maltooligosyl trehalose hydrolase.
 
  
 0.597
Noc_1775
Trehalose 6-phosphatase.
  
  
 0.566
Noc_3070
PfkB family of carbohydrate kinase.
 
 
 
 0.547
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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