STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_0259SSU ribosomal protein S6P modification protein; Belongs to the RimK family. (307 aa)    
Predicted Functional Partners:
Noc_0260
Conserved hypothetical protein.
 
     0.909
ffsA
Formylmethanofuran-tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.782
Noc_0025
Formylmethanofuran dehydrogenase, subunit B.
 
     0.782
Noc_0022
Formylmethanofuran dehydrogenase, subunit C.
 
     0.781
Noc_0024
Formylmethanofuran dehydrogenase, subunit A.
 
     0.781
Noc_0020
Protein of unknown function DUF556.
 
     0.774
Noc_0256
S-layer protein, putative.
 
     0.774
Noc_0254
Amino acid kinase family protein.
  
     0.771
Noc_0257
Protein of unknown function DUF201.
  
     0.766
Noc_0258
Histidine biosynthesis; Belongs to the HisA/HisF family.
  
     0.695
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.