STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_0284Hypothetical protein. (112 aa)    
Predicted Functional Partners:
Noc_0283
Transcriptional regulator, XRE family.
 
 0.994
Noc_2738
Transcriptional regulator, XRE family.
 
 
 0.926
Noc_1101
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.798
vapC-3
PilT protein-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.434
Noc_0279
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; TC 3.A.1.1.-; Belongs to the ABC transporter superfamily.
       0.409
Noc_0280
Carbohydrate ABC transporter membrane protein 2, CUT1 family; TC 3.A.1.1.-.
       0.409
Noc_0281
Carbohydrate ABC transporter membrane protein 1, CUT1 family; TC 3.A.1.1.-.
       0.409
Noc_0282
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; TC 3.A.1.1.-.
       0.409
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.