Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noc_0664TatD-related deoxyribonuclease. (242 aa)    
Predicted Functional Partners:
Noc_0661
ATPase.
 
     0.948
Noc_0663
Conserved hypothetical protein.
 
     0.944
Noc_0662
Conserved hypothetical protein.
  
    0.813
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
 
 0.544
Noc_0667
Heat shock protein Hsp70.
  
 
 0.543
Noc_0668
AAA ATPase; Belongs to the AAA ATPase family.
       0.520
Noc_0665
Excisionase/Xis, DNA-binding protein.
       0.513
Noc_0666
Hypothetical protein.
       0.513
Noc_0660
Conserved hypothetical protein.
 
     0.471
Noc_0669
Peptidoglycan-binding domain 1.
       0.419
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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