STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_0787Peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family. (612 aa)    
Predicted Functional Partners:
Noc_1459
Peptidase M28.
 
 
 0.698
Noc_0788
Hypothetical protein.
       0.569
Noc_0328
BNR repeat protein.
 
 
 0.540
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.534
Noc_0536
Pheromone shutdown protein.
    
   0.531
Noc_3042
Conserved hypothetical protein.
    
   0.531
Noc_0347
DNA translocase FtsK.
  
 
 0.487
Noc_0728
Conserved hypothetical protein.
  
 
 0.480
Noc_1613
Conserved hypothetical protein.
  
 
 0.472
Noc_1990
Protein of unknown function DUF1555.
  
 
 0.472
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.