Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noc_0934ABC transporter, inner membrane subunit. (470 aa)    
Predicted Functional Partners:
Noc_0933
ABC transporter, inner membrane subunit.
 
 
 0.996
Noc_2185
ABC transporter, inner membrane subunit.
 
 0.978
Noc_1768
Extracellular solute-binding protein, family 5.
 
 
 0.952
Noc_0936
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.901
Noc_1344
Extracellular solute-binding protein, family 5.
 
 
 0.886
Noc_2773
ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.838
Noc_2770
Extracellular solute-binding protein, family 5.
  
 
 0.789
Noc_0935
Hypothetical protein.
       0.536
Noc_2771
ABC transporter, inner membrane subunit.
 
     0.483
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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