Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1001Tellurite resistance TerB. (150 aa)    
Predicted Functional Partners:
Noc_1002
Stress protein.
   
 0.994
Noc_1008
Stress protein.
   
 0.989
Noc_1004
Conserved hypothetical protein.
 
     0.912
Noc_1003
Conserved hypothetical protein.
 
     0.911
Noc_1005
Conserved hypothetical protein.
 
     0.911
Noc_1006
ATP/GTP-binding protein.
 
     0.900
Noc_1007
Protein of unknown function DUF475.
 
     0.595
Noc_2152
Integral membrane protein TerC.
 
   
 0.498
Noc_1000
Hypothetical protein.
 
     0.473
Noc_1032
Hypothetical protein.
  
   
 0.468
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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