STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1106Plasmid maintenance system killer. (95 aa)    
Predicted Functional Partners:
Noc_2763
Virulence-associated protein, putative.
 
 
 
 0.805
Noc_0417
Transcriptional regulator, XRE family.
 
 
 
 0.791
Noc_0437
Plasmid maintenance system antidote protein.
 
 
 
 0.570
Noc_0571
Transcriptional regulator, XRE family.
 
 
 
 0.556
Noc_1291
Transcriptional regulator, XRE family.
 
 
 
 0.528
Noc_0697
Transcriptional regulator, XRE family.
 
 
 
 0.511
Noc_0415
Putative plasmid maintenance system antidote protein VapI.
   
 
 0.437
Noc_0681
Hypothetical protein.
    
   0.428
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.