STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1247Caa(3)-type oxidase, subunit IV. (230 aa)    
Predicted Functional Partners:
Noc_1246
Cytochrome/quinol oxidase subunit 3.
       0.783
Noc_0297
Cytochrome c1.
  
  
 0.751
Noc_0552
Cytochrome c, class I.
 
   
 0.698
Noc_1241
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit.
 
  
 0.688
Noc_1238
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
 
     0.687
Noc_3050
Cytochrome c, class I.
 
   
 0.672
Noc_1242
Quinol:cytochrome c oxidoreductase quinone-binding subunit 2.
 
     0.665
Noc_1240
Quinol:cytochrome c oxidoreductase membrane protein.
 
  
 0.642
Noc_1445
Protein of unknown function UPF0057.
    
   0.641
Noc_2060
Transcriptional regulator.
    
   0.641
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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