STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1260Metallophosphoesterase. (296 aa)    
Predicted Functional Partners:
Noc_1259
Protein of unknown function DUF748.
       0.639
Noc_1455
Conserved hypothetical protein 147.
 
     0.519
Noc_1765
Conserved hypothetical protein-transmembrane prediction.
  
     0.508
Noc_1261
Conserved hypothetical protein.
       0.503
Noc_1764
Cytochrome c, class I.
  
     0.471
Noc_1262
ABC transporter, ATPase subunit.
       0.448
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
  
 0.436
Noc_2682
Diguanylate cyclase/phosphodiesterase.
  
  
 0.429
Noc_0376
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
  
 0.412
Noc_1758
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
  
 0.412
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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