STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1341Carbonic anhydrase. (193 aa)    
Predicted Functional Partners:
Noc_1132
Carbonate dehydratase.
     
 0.926
Noc_1989
Putative glycan acetyltransferase.
    
 
 0.882
Noc_0109
Formate/nitrite transporter.
  
  
 0.870
Noc_0332
Ribulose 1,5-bisphosphate carboxylase small subunit.
    
 
 0.846
Noc_1251
Conserved hypothetical protein; Belongs to the UPF0753 family.
  
    0.815
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.788
Noc_1003
Conserved hypothetical protein.
   
    0.742
Noc_1342
Peptidoglycan-binding LysM.
       0.740
Noc_1343
Protein of unknown function UPF0016.
       0.732
Noc_1340
Heavy metal efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.458
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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