STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1438Homogentisate 1,2-dioxygenase. (372 aa)    
Predicted Functional Partners:
Noc_1437
4-hydroxyphenylpyruvate dioxygenase.
 
 0.999
Noc_1439
Fumarylacetoacetate (FAA) hydrolase.
 
  
 0.993
Noc_1440
Maleylacetoacetate isomerase.
 
 
 0.962
Noc_2226
Pterin-4-alpha-carbinolamine dehydratase.
  
  
 0.750
Noc_1436
Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
   
 0.496
Noc_1441
Hypothetical protein.
       0.465
Noc_1561
Diaminobutyrate aminotransferase apoenzyme; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.425
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
     
 0.411
Noc_0174
Chorismate mutase.
      
 0.404
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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