STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1967Polysaccharide deacetylase. (339 aa)    
Predicted Functional Partners:
Noc_1958
Hypothetical protein.
    0.924
Noc_1977
Glycosyl transferase, group 1.
    0.838
Noc_1962
Esterase/lipase/thioesterase family.
 
  
 0.779
Noc_1959
Esterase/lipase/thioesterase family.
 
     0.773
Noc_1955
O-antigen polymerase.
 
   
 0.757
Noc_1971
Possible CapK protein.
 
     0.749
Noc_0588
Glycosyl transferase, family 2.
  
  
 0.744
Noc_1978
Conserved hypothetical protein.
 
     0.743
Noc_1973
Glycosyl transferase, group 1.
    0.718
Noc_1984
Lipopolysaccharide biosynthesis.
 
     0.713
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.