Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Noc_1971 | Noc_1972 | Possible CapK protein. | Glycosyl transferase, group 1. | 0.915 |
Noc_1971 | Noc_1973 | Possible CapK protein. | Glycosyl transferase, group 1. | 0.956 |
Noc_1971 | Noc_1977 | Possible CapK protein. | Glycosyl transferase, group 1. | 0.836 |
Noc_1971 | Noc_1978 | Possible CapK protein. | Conserved hypothetical protein. | 0.806 |
Noc_1971 | Noc_1979 | Possible CapK protein. | Glycosyl transferases group 1. | 0.827 |
Noc_1971 | Noc_1980 | Possible CapK protein. | Conserved hypothetical protein. | 0.826 |
Noc_1971 | Noc_1981 | Possible CapK protein. | Polysaccharide deacetylase. | 0.774 |
Noc_1971 | Noc_1982 | Possible CapK protein. | Hypothetical protein. | 0.433 |
Noc_1971 | Noc_1983 | Possible CapK protein. | Protein-tyrosine kinase. | 0.452 |
Noc_1971 | Noc_1984 | Possible CapK protein. | Lipopolysaccharide biosynthesis. | 0.716 |
Noc_1972 | Noc_1971 | Glycosyl transferase, group 1. | Possible CapK protein. | 0.915 |
Noc_1972 | Noc_1973 | Glycosyl transferase, group 1. | Glycosyl transferase, group 1. | 0.879 |
Noc_1972 | Noc_1977 | Glycosyl transferase, group 1. | Glycosyl transferase, group 1. | 0.624 |
Noc_1972 | Noc_1978 | Glycosyl transferase, group 1. | Conserved hypothetical protein. | 0.846 |
Noc_1972 | Noc_1979 | Glycosyl transferase, group 1. | Glycosyl transferases group 1. | 0.865 |
Noc_1972 | Noc_1980 | Glycosyl transferase, group 1. | Conserved hypothetical protein. | 0.846 |
Noc_1972 | Noc_1981 | Glycosyl transferase, group 1. | Polysaccharide deacetylase. | 0.854 |
Noc_1972 | Noc_1982 | Glycosyl transferase, group 1. | Hypothetical protein. | 0.625 |
Noc_1972 | Noc_1983 | Glycosyl transferase, group 1. | Protein-tyrosine kinase. | 0.718 |
Noc_1972 | Noc_1984 | Glycosyl transferase, group 1. | Lipopolysaccharide biosynthesis. | 0.789 |
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