Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1985Polysaccharide export protein. (208 aa)    
Predicted Functional Partners:
Noc_1497
Protein-tyrosine kinase.
 
 
 0.992
Noc_1984
Lipopolysaccharide biosynthesis.
 
 
 0.992
Noc_1999
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.977
Noc_1983
Protein-tyrosine kinase.
 
 
 0.959
Noc_1979
Glycosyl transferases group 1.
 
  
 0.953
Noc_1525
Polysaccharide export protein.
  
  
 
0.926
Noc_1508
Undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.924
Noc_1982
Hypothetical protein.
 
     0.839
Noc_1987
TPR repeat protein.
 
   
 0.839
Noc_2178
Glycosyl transferase, family 2.
  
  
 0.833
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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