STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_1990Protein of unknown function DUF1555. (330 aa)    
Predicted Functional Partners:
Noc_0347
DNA translocase FtsK.
    
 
 0.727
Noc_2549
Protein of unknown function DUF255.
    
   0.695
Noc_0859
TonB-dependent hemoglobin/transferrin/lactoferrin receptor.
    
 
 0.653
Noc_1269
TonB-dependent receptor.
    
 
 0.653
Noc_1489
TonB-dependent receptor.
    
   0.644
Noc_1925
TonB-dependent receptor.
    
   0.644
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
   
 
 0.609
Noc_1459
Peptidase M28.
  
 
 0.494
Noc_1987
TPR repeat protein.
  
    0.435
Noc_0030
Peptidase S41A; Belongs to the peptidase S41A family.
   
   0.428
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.