Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
Noc_1997Two component transcriptional regulator, sigma-54 specific, Fis family. (452 aa)    
Predicted Functional Partners:
Noc_1998
Signal transduction histidine kinase.
 
 
   0.949
Noc_1999
Undecaprenyl-phosphate galactosephosphotransferase.
 
   
 0.804
Noc_2793
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.780
Noc_2156
Cobyrinic acid a,c-diamide synthase.
  
 
 0.721
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 
 0.656
Noc_1984
Lipopolysaccharide biosynthesis.
  
    0.649
Noc_1978
Conserved hypothetical protein.
  
     0.636
Noc_1987
TPR repeat protein.
 
   
 0.628
Noc_1980
Conserved hypothetical protein.
  
     0.619
Noc_2165
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.616
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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