Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2005Protein of unknown function DUF1597. (415 aa)    
Predicted Functional Partners:
Noc_1193
Abortive infection protein.
  
     0.766
Noc_2136
Conserved hypothetical protein.
  
     0.756
bamA
Outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.743
bamD
Probable transmembrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.741
Noc_1219
Peptidylprolyl isomerase.
    
 
 0.735
Noc_1251
Conserved hypothetical protein; Belongs to the UPF0753 family.
  
     0.728
Noc_1585
DNA mismatch repair protein MutS-like protein.
  
     0.726
Noc_1541
Outer membrane efflux protein.
  
     0.696
Noc_1319
Purine-like phosphorylase, family 1.
  
    0.692
Noc_1224
Hypothetical protein.
  
     0.686
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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