STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2071Plasmid stabilization system protein. (97 aa)    
Predicted Functional Partners:
Noc_0445
Helix-turn-helix protein, CopG.
 
 
 0.907
Noc_2541
Hypothetical protein.
  
 
 0.872
Noc_2072
Hypothetical protein.
       0.789
Noc_0168
Protein of unknown function UPF0150.
  
     0.636
Noc_2070
Hypothetical protein.
       0.572
Noc_2242
Protein of unknown function UPF0150.
  
     0.480
Noc_2073
Hypothetical protein.
       0.460
Noc_2942
Hypothetical protein.
  
     0.451
Noc_2546
Protein of unknown function DUF820.
  
     0.437
Noc_1506
Protein of unknown function UPF0150.
  
     0.429
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.