STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2154Hypothetical protein. (132 aa)    
Predicted Functional Partners:
Noc_2937
Secretion protein HlyD.
  
     0.596
Noc_2273
Type IV pilus assembly protein PilX.
  
     0.508
Noc_2163
Flagellar biosynthesis protein, FliO.
 
    0.477
tmcA
tRNA(Met)-cytidine N(4)-acetyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
     0.464
Noc_2398
ABC transporter, inner membrane subunit.
  
     0.451
Noc_0126
CheA signal transduction histidine kinase.
     
 0.447
Noc_2355
Flagellar FliJ-like protein.
 
     0.432
Noc_2272
Type IV pilus assembly protein PilW.
  
     0.429
Noc_2157
GTP-binding signal recognition particle SRP54.
 
     0.400
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.