STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2185ABC transporter, inner membrane subunit. (309 aa)    
Predicted Functional Partners:
Noc_2184
ABC transporter, inner membrane subunit.
 
 0.999
Noc_2772
ABC transporter, inner membrane subunit.
 
 0.998
Noc_2773
ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.997
Noc_0936
Oligopeptide/dipeptide ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.994
Noc_1344
Extracellular solute-binding protein, family 5.
 0.994
Noc_0934
ABC transporter, inner membrane subunit.
 
 0.993
Noc_2770
Extracellular solute-binding protein, family 5.
 0.992
Noc_0933
ABC transporter, inner membrane subunit.
  
  
 
0.922
Noc_2186
Conserved hypothetical protein.
       0.798
nagZ
Glycoside hydrolase, family 3-like protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
       0.768
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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