Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2272Type IV pilus assembly protein PilW. (342 aa)    
Predicted Functional Partners:
Noc_2273
Type IV pilus assembly protein PilX.
 
  
 0.996
Noc_2274
Fimbrial assembly protein.
 
  
 0.996
Noc_2271
Type IV fimbrial biogenesis protein PilV.
 
  
 0.995
Noc_2270
Putative type-4 fimbrial pilin related signal peptide protein.
 
  
 0.985
Noc_2275
General secretion pathway protein H.
 
  
 0.894
Noc_2892
General secretion pathway protein H.
 
  
 0.847
Noc_0250
Pilus assembly protein, PilQ.
  
  
 0.837
Noc_0249
Pilus assembly protein, PilO.
 
  
 0.828
Noc_0248
Type 4 fimbrial biogenesis protein PilN.
 
  
 0.821
Noc_0756
General secretion pathway protein J.
  
  
 0.791
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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