STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2273Type IV pilus assembly protein PilX. (182 aa)    
Predicted Functional Partners:
Noc_2272
Type IV pilus assembly protein PilW.
 
  
 0.994
Noc_2271
Type IV fimbrial biogenesis protein PilV.
 
  
 0.993
Noc_2274
Fimbrial assembly protein.
 
  
 0.993
Noc_2270
Putative type-4 fimbrial pilin related signal peptide protein.
 
  
 0.967
Noc_2275
General secretion pathway protein H.
 
   
 0.859
Noc_0756
General secretion pathway protein J.
  
  
 0.850
Noc_2892
General secretion pathway protein H.
  
  
 0.846
Noc_0248
Type 4 fimbrial biogenesis protein PilN.
 
   
 0.775
Noc_2459
Conserved hypothetical protein.
  
   
 0.760
Noc_1658
Type IV pilus assembly PilZ.
  
   
 0.751
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.