STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2292Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
Noc_2290
Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.
 
   
 0.634
Noc_2291
Protein of unknown function DUF81.
 
     0.609
Noc_1604
Glutamate synthase (NADH) large subunit.
  
  
 0.567
Noc_2410
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.498
Noc_2464
Sigma E regulatory protein, MucB/RseB.
  
     0.495
Noc_2289
Sulfate adenylyltransferase subunit 2.
     
 0.434
Noc_2288
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.428
Noc_2465
Anti sigma-E protein, RseA.
  
     0.423
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
   
  
 0.421
Noc_2682
Diguanylate cyclase/phosphodiesterase.
   
  
 0.407
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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