STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2486SUF system FeS assembly protein. (150 aa)    
Predicted Functional Partners:
Noc_1649
Aminotransferase, class V.
 
 0.999
Noc_2487
L-selenocysteine selenide-lyase (L-alanine-forming) / cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.997
Noc_2489
Iron-regulated ABC transporter ATPase subunit SufC.
 
  
 0.992
djlA
Heat shock protein DnaJ-like protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host.
  
 
 0.985
Noc_2488
Iron-regulated ABC transporter permease protein SufD.
 
  
 0.979
Noc_1656
Aminotransferase, class V.
 
 
 0.977
Noc_1939
Conserved hypothetical protein.
  
 
 0.969
Noc_2490
Iron-regulated ABC transporter membrane component SufB.
  
  
 0.958
Noc_2491
Transcriptional regulator, BadM/Rrf2 family.
 
  
 0.956
Noc_1650
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
  
 0.953
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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