STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2763Virulence-associated protein, putative. (100 aa)    
Predicted Functional Partners:
Noc_2762
Plasmid maintenance system killer.
 
 
 
 0.956
Noc_0416
Plasmid maintenance system killer.
 
 
 
 0.844
Noc_1106
Plasmid maintenance system killer.
 
 
 
 0.805
Noc_1291
Transcriptional regulator, XRE family.
  
     0.738
Noc_0697
Transcriptional regulator, XRE family.
  
     0.458
Noc_0438
Plasmid maintenance system killer.
   
   0.454
Noc_0570
Plasmid maintenance system killer.
   
   0.454
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.