STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_2973Conserved hypothetical protein. (490 aa)    
Predicted Functional Partners:
Noc_2972
Hypothetical protein.
 
     0.917
Noc_0977
VacJ-like lipoprotein.
    
 
 0.760
Noc_0978
Conserved hypothetical protein.
    
 
 0.760
Noc_2787
VacJ-like lipoprotein.
    
 
 0.760
Noc_2136
Conserved hypothetical protein.
  
     0.739
Noc_1088
Transcriptional regulator, MarR family.
  
     0.608
Noc_1741
Copper resistance D.
  
     0.547
Noc_2506
Multicopper oxidase, type 3.
  
     0.519
Noc_1271
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 
 0.513
Noc_1585
DNA mismatch repair protein MutS-like protein.
  
     0.513
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.