STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noc_3013Peptidoglycan-binding LysM. (345 aa)    
Predicted Functional Partners:
Noc_0251
Fimbrial assembly protein pilQ precursor.
  
 
 
 0.965
Noc_0247
Type IV pilus assembly protein PilM.
  
 
   0.947
Noc_0248
Type 4 fimbrial biogenesis protein PilN.
  
 
   0.947
Noc_0249
Pilus assembly protein, PilO.
  
 
   0.947
Noc_0250
Pilus assembly protein, PilQ.
  
 
   0.873
Noc_1874
Phage tail sheath protein.
  
 
 0.872
Noc_1866
Phage baseplate assembly protein W.
  
   0.863
Noc_1873
Conserved hypothetical phage tail region protein.
  
   0.834
Noc_1864
Conserved hypothetical protein 2243.
  
 
 0.824
Noc_1865
Conserved hypothetical protein 2243.
  
 
 0.824
Your Current Organism:
Nitrosococcus oceani
NCBI taxonomy Id: 323261
Other names: N. oceani ATCC 19707, Nitrosococcus oceani ATCC 19707, Nitrosococcus oceani C-107, Nitrosococcus oceani NCIMB 11848, Nitrosococcus oceani str. ATCC 19707, Nitrosococcus oceani strain ATCC 19707
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.